SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCAGAAAAGGGGCCAAGGGGAAAGAC
1._RUQ_1531
______GG_______
2._PA156[PER]
_____CC____GG___
3._PA_156_[PER]
_____CCGG_AA_____
4._PA_156_[PER]
_____CCGG_AA_____
5._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
6._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
7._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
8._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
9._PA_156_[PER]
_____CCGG_AA_____
10._PA_156_[PER]
_____CCGG_AA_____
11._PA_156_[PER]
_____CCGG_AA_____
12._PA_156_[PER]
_____CCGG_AA_____
13._RUQ_1531
_____CCGG_AA_____
14._PA_156_[PER]
_____CCGG_AA_____
15._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
16._RUQ_1531
_____CC_GG__GG___
17._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
18._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
19._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
20._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
21._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
22._PA_156_[PER]
_____CCAA_AA_____
23._PA_156_[PER]
_____CCAA_AA_____
24._PA_156_[PER]
_____CCAA_AA_____
25._PA_156_[PER]
_____CCAA_AA_____
26._PA_156_[PER]
_____CCAA_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAAGACAGCCAGCCGG
1._RUQ_1531
_TT______AC_GG___
2._PA156[PER]
_______CTAC_CC__CC
3._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGG_
4._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
5._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
6._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGG_
7._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
8._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
9._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
10._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
11._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
12._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
13._RUQ_1531
_TTTT_CC_TT_ACCTGGAGGGCC
14._PA_156_[PER]
_TTTT_CC_TT_ACCTGGAGGGCC
15._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
16._RUQ_1531
_TT_TT___CTACCTGGAGGGCC
17._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTT_
18._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
19._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
20._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
21._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
22._PA_156_[PER]
_TTCT_AA_TT_AACTGGAGTT_
23._PA_156_[PER]
_TTCT_AA_TT_AACTGGAGTTCC
24._PA_156_[PER]
_TTCT_AA_TT_AACTGGAGTTCC
25._PA_156_[PER]
_TTCT_AA_TT_AACTGGAGTTCC
26._PA_156_[PER]
_TTCT_AA_TT_AACTGGAGTTCC
 2930313233343536373839404142
_Input profile
GGTTGGAAGGAAGGGGGGCCTTATGGGG
1._RUQ_1531
_____AA______GG_
2._PA156[PER]
__GGAAGGAA_______GG
3._PA_156_[PER]
CC__AACCAA_CCGG__AT__
4._PA_156_[PER]
CC__AA_AA_CCGG__AT__
5._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
6._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
7._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
8._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
9._PA_156_[PER]
CC__AACCAA_CCGG__AT__
10._PA_156_[PER]
CC__AACCAA_CCGG__AT__
11._PA_156_[PER]
CC__AACCAA_CCGG__AT__
12._PA_156_[PER]
CC__AACCAA_CCGG__AT__
13._RUQ_1531
CC__AACCAA_CCGG__AT__
14._PA_156_[PER]
CC__AACCAA_CCGG__AT__
15._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
16._RUQ_1531
__GGAACCAA_CC____GGGG
17._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
18._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
19._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
20._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
21._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
22._PA_156_[PER]
CT__AACCAA_CTGG__AT__
23._PA_156_[PER]
CT__AACCAA_CTGG__AT__
24._PA_156_[PER]
CT__AACCAA_CTGG__AT__
25._PA_156_[PER]
CT__AACCAA_CTGG__AT__
26._PA_156_[PER]
CT__AACCAA_CTGG__AT__
 4344454647484950515253545556
_Input profile
AAAAAGGGGGATGGGGCCACAGAAGGCG
1._RUQ_1531
_________AC___CG
2._PA156[PER]
AATT____CC______CG
3._PA_156_[PER]
AA___GG____AC_TT_CG
4._PA_156_[PER]
AA___GG____AC_TT_CG
5._GC-05-137-3-39
AATTAGGGGGATCC_CCACAGTTGGCG
6._GC-05-137-3-39
AATTAGGGGGATCC_CCACAGTTGGCG
7._GC-05-137-3-39
AATTAGGGGGATCC_CCACAGTTGGCG
8._GC-05-137-3-39
AATTAGGGGGATCC_CCACAGTTGGCG
9._PA_156_[PER]
AA___GG____AC_TT_CG
10._PA_156_[PER]
AA___GG____AC_TT_CG
11._PA_156_[PER]
AA___GG____AC_TT_CG
12._PA_156_[PER]
AA___GG____AC_TT_CG
13._RUQ_1531
AA___GG____AC_TT_CG
14._PA_156_[PER]
AA___GG____AC_TT_CG
15._GC-05-137-3-39
AATTAGGGGGATCC_CCACAGTTAGCG
16._RUQ_1531
AA_____CC__AC_TT_CG
17._GC-05-138-3-40
AACTGGGGGGATCC_CCCCGGGTAGCG
18._GC-05-138-3-40
AACTGGGGGGATCC_CCCCGGGTAGCG
19._GC-05-138-3-40
AACTGGGGGGATCC_CCCCGGGTAGCG
20._GC-05-138-3-40
AACTGGGGGGATCC_CCCCGGGTAGCG
21._GC-05-138-3-40
AACTGGGGGGATCC_CCCCGGGTAGCG
22._PA_156_[PER]
AA___GG____CC_GT_CG
23._PA_156_[PER]
AA___GG____CC_GT_CG
24._PA_156_[PER]
AA___GG____CC_GT_CG
25._PA_156_[PER]
AA___GG____CC_GT_CG
26._PA_156_[PER]
AA___GG____CC_GT_CG
 5758596061626364656667686970
_Input profile
CCGGAAAAAAAACCGGAAAACCAAACGG
1._RUQ_1531
CC_TT___GGGG____ACTT
2._PA156[PER]
CC_TT______TT____
3._PA_156_[PER]
CC__TT__GG_______
4._PA_156_[PER]
CC__TT__GG_______
5._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTAC_
6._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
7._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
8._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
9._PA_156_[PER]
CC__TT__GG_______
10._PA_156_[PER]
CC__TT__GG_______
11._PA_156_[PER]
CC__TT__GG_______
12._PA_156_[PER]
CC__TT__GG_______
13._RUQ_1531
CC__TT__GG_______
14._PA_156_[PER]
CC__TT__GG_______
15._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
16._RUQ_1531
CC_TTTT__GGGGTT__TTAC_
17._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
18._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
19._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
20._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
21._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
22._PA_156_[PER]
AA__CT__GG_______
23._PA_156_[PER]
AA__CT__GG_______
24._PA_156_[PER]
AA__CT__GG_______
25._PA_156_[PER]
AA__CT__GG_______
26._PA_156_[PER]
AA__CT__GG_______
 717273747576777879808182  
_Input profile
GGCCGGGGAGCCAACGGGAAGGAGX_XX_X
1._RUQ_1531
_GG__AG______AGX_XX_X
2._PA156[PER]
GGCCCC_______CC_X_XX_X
3._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
4._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
5._GC-05-137-3-39
_GGCCCCAGCCTTCGCCAACCAGX_XX_X
6._GC-05-137-3-39
_GGCCCCAGCCTTCGCCAACCAGX_XX_X
7._GC-05-137-3-39
_GGCCCCAGCCTTCGCCAACCAGX_XX_X
8._GC-05-137-3-39
_GGCCCCAGCCTTCGCCAACCAGX_XX_X
9._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
10._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
11._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
12._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
13._RUQ_1531
_GGCC___TTCG_AACCAGX_XX_X
14._PA_156_[PER]
_GGCC___TTCG_AACCAGX_XX_X
15._GC-05-137-3-39
_GGCCCCAGCCTTCGCCAACCAGX_XX_X
16._RUQ_1531
_GGCC_GGCC_____AGX_XX_X
17._GC-05-138-3-40
_CGCTCCAACCCTCGCCAATTAGX_XX_X
18._GC-05-138-3-40
_CGCTCCAACCCTCGCCAATTAGX_XX_X
19._GC-05-138-3-40
_CGCTCCAACCCTCGCCAATTAGX_XX_X
20._GC-05-138-3-40
_CGCTCCAACCCTCGCCAATTAGX_XX_X
21._GC-05-138-3-40
_CGCTCCAACCCTCGCCAATTAGX_XX_X
22._PA_156_[PER]
_CGCT___CTCG_AATTAGX_XX_X
23._PA_156_[PER]
_CGCT___CTCG_AATTAGX_XX_X
24._PA_156_[PER]
_CGCT___CTCG_AATTAGX_XX_X
25._PA_156_[PER]
_CGCT___CTCG_AATTAGX_XX_X
26._PA_156_[PER]
_CGCT___CTCG_AATTAGX_XX_X

Input profile: PA_156_[PER] RUQ_1531

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_156_[PER] RUQ_1531

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_156_[PER] PA156[PER]

59.1 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._PA_156_[PER]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._PA_156_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

49.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

49.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

10._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

11._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

12._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

13._PA_156_[PER] RUQ_1531

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._PA_156_[PER]

48.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

15._PA_156_[PER] GC-05-137-3-39

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

16._PA_156_[PER] RUQ_1531

44.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_156_[PER] GC-05-138-3-40

40.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._PA_156_[PER]

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

25._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

26._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998